Multiscale Modeling and Simulation Platform for Materials and Life Sciences

J-OCTA

Multiscale Modeling and Simulation Platform for Materials and Life Sciences

J-OCTA

Simulation
Viscosity
Molecular Dynamics
Shear Flow
Lees-Edwards

Evaluation of Viscosity by Using MD

Full-Atomistic Molecular Dynamics (FAMD) with Lees–Edwards boundary conditions was used to apply shear flow. The viscosity of n-decane and n-hexadecane was evaluated, and changes in viscosity with varying shear rates were analyzed, with comparison to the Green–Kubo method also performed.
Use Cases Highlights
  • Shear flow and viscosity evaluation using Lees–Edwards boundary conditions in Molecular Dynamics
  • Evaluation of shear rate dependence of viscosity
  • Comparison with viscosity evaluation using the Green–Kubo method

Construction of simulation systems

Simulation of shear flow of n-decane and n-hexadecane using Lees–Edwards boundary conditions in J-OCTA is shown.

Shear flow behavior

Comparison of viscosity evaluation results

Viscosity plotted against shear rate in double logarithmic scale is shown. As shear rate decreases, viscosity increases, but for n-decane it approaches a constant below shear rates of about 1×10¹⁰ [1/s]. In literature [1], viscosity evaluated by the Green–Kubo method under the same conditions was 0.178 [E-3 Pa·s] for n-decane and 1.17 [E-3 Pa·s] for n-hexadecane, showing similar trends.

Evaluation of viscosity
Reference
[1] S.T.Cui, P. T. CUMMINGS and H. D. COCHRAN, Molecular Physics, 1998, 93, 1, 117-121
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